PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.158390.1
Common NameCsa_5G635950, LOC101221024
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 92aa    MW: 10447.9 Da    PI: 9.3639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.158390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.15.8e-0721571854
                    HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    +  ++Lr+l+P+ + + +  K+s + +L+++++YI++L
  Cucsa.158390.1 21 ELVSKLRQLVPEiR-HRRPDKVSASKVLQETCNYIRNL 57
                    56689*******77.67778899999**********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.918357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-9775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-81773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-42157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRQSS ASRISDDQII ELVSKLRQLV PEIRHRRPDK VSASKVLQET CNYIRNLHRE  60
VDDLSERLSQ LLSTIDSDSA EAAIIRSLIM Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818892e-75LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132632e-75LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151201.24e-57PREDICTED: transcription factor PRE6-like
RefseqXP_008459306.14e-57PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX13e-42PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0A0KXB95e-57A0A0A0KXB9_CUCSA; Transcription regulator
STRINGPOPTR_0017s11760.14e-47(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-34bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]